HR Excellence in Science

Tanja Shabarova, Ph.D.

Position Postdoc
Department of Aquatic Microbial Ecology (AME)
Institute of Hydrobiology

Contact details 420387775841


Research focus
Ecology, distribution and physiology of LimA group (genus Limnohabitans).
Bacterial successions in dynamic water bodies as reaction on flood events.


Short CV
2014 – present Postdoc at Institute of Hydrobiology Biology Centre CAS, Czech Republic
2009 – 2014 Postdoctoral researcher at Limnological Station, University of Zurich, Switzerland
2009 – 2014 PhD thesis at Limnological Station, University of Zurich, Switzerland
2006 – 2008 MSc Microbiology and Immunology, ETH Zurich, Switzerland

Total found: 12 records
Mukherjee I., Grujčić V., Salcher M., Znachor P., Seďa J., Devetter M., Rychtecký P., Šimek K., Shabarova T. (2024) Integrating depth-dependent protist dynamics and microbial interactions in spring succession of a freshwater reservoir. Environmental Microbiome 19: 31.
DOI: 10.1186/s40793-024-00574-5
Kavagutti V., Bulzu P., Chiriac M., Salcher M., Mukherjee I., Shabarova T., Grujčić V., Mehrshad M., Kasalický V., Andrei A.S., Jezberová J., Seďa J., Rychtecký P., Znachor P., Šimek K., Ghai R. (2023) High‑resolution metagenomic reconstruction of the freshwater spring bloom. Microbiome 11: 15.
DOI: 10.1186/s40168-022-01451-4
Park H., Shabarova T., Salcher M., Kosová L., Rychtecký P., Mukherjee I., Šimek K., Porcal P., Seďa J., Znachor P., Kasalický V. (2023) In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model. Microbiome 11: 112.
DOI: 10.1186/s40168-023-01522-0
Mujakic I., Andrei A., Shabarova T., Kolesár Fecskeová L., Salcher M., Piwosz K., Ghai R., Koblížek M. (2021) Common presence of phototrophic Gemmatimonadota in temperate freshwater lakes. mSystems 6: e01241-20.
DOI: 10.1128/mSystems.01241-20
Shabarova T., Salcher M., Porcal P., Znachor P., Nedoma J., Grossart H., Seďa J., Hejzlar J., Šimek K. (2021) Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology 6: 479–488.
DOI: 10.1038/s41564-020-00852-1
Mukherjee I., Salcher M., Andrei A., Kavagutti V., Shabarova T., Grujčić V., Haber M., Layoun P., Hodoki Y., Nakano S., Šimek K., Ghai R. (2020) A freshwater radiation of diplonemids Environmental Microbiology 22: 4658–4668.
Piwosz K., Shabarova T., Pernthaler J., Posch T., Šimek K., Porcal P., Salcher M. (2020) Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations mSphere 5: e00052-20.
DOI: 10.1128/mSphere.00052-20
Grujčić V., Nuy J. K., Salcher M., Shabarova T., Kasalický V., Boenigk J., Jensen M. , Šimek K. (2018) Cryptophyta as major bacterivores in freshwater summer plankton ISME Journal 12: 1668-1681.
DOI: 10.1038/s41396-018-0057-5
Piwosz K., Shabarova T., Tomasch J., Šimek K., Kopejtka K., Kahl S., Pieper D.H. , Koblížek M. (2018) Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS) ISME Journal 12: 2640-2654.
DOI: 10.1038/s41396-018-0213-y
Šimek K., Grujčić V., Hahn M., Horňák K., Jezberová J., Kasalický V., Nedoma J., Salcher M., Shabarova T. (2018) Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates Limnology and Oceanography 63: 484–502.
DOI: 10.1002/lno.10759
Shabarova T., Kasalický V., Šimek K., Nedoma J., Znachor P., Posch T., Pernthaler J., Salcher M. (2017) Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach Environmental Microbiology 19: 1296–1309 .
DOI: 10.1111/1462-2920.13663
Šimek K., Pitsch G., Salcher M., Sirová D., Shabarova T., Adamec L., Posch T. (2017) Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa Journal of Eukaryotic Microbiology 64: 336–348. .
DOI: 10.1111/jeu.12368


Biology Centre CAS
Branišovská 1160/31
370 05 České Budějovice
Data box: r84nds8


+420 387 775 111 (switchboard)
+420 387 775 051 (secretariat)
+420 778 468 552 (for media)

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