Current Trainings
Trainings 2022 |
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Training name |
|
The Date |
Linux Command Line – mandatory part of Introduction to Bioinformatics |
|
31.3. |
Introduction to Bioinformatics |
|
7.4. – 8.4. |
demo BD FACSymphony A1 |
|
april |
program R |
|
9.5. |
Academic writing |
|
13.5. |
Academic career |
|
27.5. |
program R |
|
12.9 |
Leadership |
|
september |
Intercultural communication |
|
september |
Work-life balance |
|
october |
Description of trainings:
Linux Command Line
Mandatory part of the Introduction to Bioinformatics training.
Learning, how to work with command line
Lecturer: Dr. Abdoallah Sharaf
Introducton to Bioinformatics
· Quick introduction to NGS data and NGS data formats
· Standard commands in the Terminal to process NGS data – brief overview
· Visualization of the quality of raw NGS data
· Pre-processing of short-reads FASTA/FASTQ files using various programs
· Read mapping to the reference sequence
· Visualization and evaluation of mapping quality
· Identification and removal of duplicate reads
· Identification of unmapped reads – Blast
Lecturers from the SEQme company
Program R
· introduction to R & RStudio
· basic statistical approach overview: parametric and non-parametric statistical methods, outliers, testing of hypotheses
· two-sample tests
· ANOVA
· linear regression
· contingency tables
· survival analysis
· K – means clustering
· Spearman correlation coefficient
Lecturer: RNDr. Václav Čapek, Ph.D.
Akademic writing
· write about your own research
· learn to analyze and critique texts written by others
· produce texts that you need (e.g. an abstract, introduction, discussion/conclusion)
· receive in-depth feedback on the structure, logic, and language of your texts
Lecturer: Mgr. Kamila Etchegoyen Rosolová, Ph.D.
Akademic career
· Reflection on the formal and informal demands of a scientific career
· Key aspects of the evaluation of scientists, what to look for
· Current systems for evaluating scientific performance
· Strategic career planning
· Model dilemmas associated with starting a scientific career
Lecturer: Mgr. Kateřina Cidlinská, Ph.D. a Mgr. Kateřina Machovcová, Ph.D.
More information for the Leadership training, Intercultural communication and Work-life balance will be published after the selection of the supplier.