| Total found: 49 records |
Chiriac M., Layoun P., Fernandes C., Szöke-Nagy T., Kasalický V., Okazaki Y., Woodhouse J.N., Grossart H., Piwosz K., Znachor P., Sonntag B., Callieri C., Orlić S., Sommaruga R., Lepère C., Biderre-Petit C., Tammert H., Herlemann D.P.R., Ślusarczyk M., Bednarska A., Banciu H.L., Zalewski M., Woźniczka A., Ghai R., Salcher M., Haber M. (2026) Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order. Microbiome
14: 27.
DOI: 10.1186/s40168-025-02272-x
|
Bukhdruker S., Gushchin I., Shevchenko V., Kovalev K., Polovinkin V., Tsybrov F., Astashkin R., Alekseev A., Mikhaylov A., Bukhalovich S., Bratanov D. ..., Ghai R. (2025) Proteorhodopsin insights into the molecular mechanism of vectorial proton transport. Science Advances
11: eadu5303.
DOI: 10.1126/sciadv.adu5303
|
Bulzu P., Henriques Vieira H., Ghai R. (2025) Lineage‑specific expansions of polinton‑like viruses in photosynthetic cryptophytes. Microbiome
13: 154.
DOI: 10.1186/s40168-025-02148-0
|
Fernandes C., Haber M., Layoun P., Chiriac M., Bulzu P., Ghai R., Kasalický V., Shabarova T., Grossart H., Woodhouse J., Piwosz K., Alonso C., Zanetti J., Hamilton D.P., Ngochera M., Nakano S., Okazaki Y., Salcher M. (2025) Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium. Nature Microbiology
10: 2194–2206.
DOI: 10.1038/s41564-025-02091-8
|
Hager K., Luo Z.-H., Montserrat-Diez M., Ponce-Toledo R.I., Baur P., Dahlke S., Andrei A.S., Bulzu P., Ghai R., Urich T., Glatzel S., Schleper C., Rodrigues-Oliveira T. (2025) Diversity and environmental distribution of Asgard archaea in shallow saline sediments. Frontiers in Microbiology
16: 1549128.
DOI: 10.3389/fmicb.2025.1549128
|
Mukherjee I., Bulzu P., Boukheloua R., Asghar U., Park H., Henriques Vieira H., Chiriac M., Kasalický V., Znachor P., Rychtecký P., Salcher M., Šimek K., Haber M., Ghai R. (2025) Cultivation, genomics, and giant viruses of a ubiquitous and heterotrophic freshwater cryptomonad. The ISME Journal
19: wraf271.
DOI: 10.1093/ismejo/wraf271
|
Salcher M., Layoun P., Fernandes C., Chiriac M., Bulzu P., Ghai R., Shabarova T., Lanta V., Callieri C., Sonntag B., Posch T., Lepori F. , Znachor P., Haber M. (2025) Bringing the uncultivated microbial majority of freshwater ecosystems into culture. Nature Communications
16: 7971.
DOI: 10.1038/s41467-025-63266-9
|
Boukheloua R., Mukherjee I., Park H., Šimek K., Kasalický V., Ngochera M., Grossart H., Picazo-Mozo A., Camacho A. , Cabello-Yeves P.J., Rodriguez-Valera F. , Callieri C., Andrei A.S., Pernthaler J., Posch T., Alfreider A., Sommaruga R., Hahn M., Sonntag B., López-García P., Moreira D., Jardillier L., Lepère C., Biderre-Petit C., Bednarska A., Ślusarczyk M., Tóth V.R., Banciu H.L., Kormas K., Orlić S., Śantić D., Muyzer G., Herlemann D.P.R., Tammert H., Bertilsson S., Langenheder S., Zechmeister T. , Salmaso N., Storelli N., Capelli C., Lepori F. , Lanta V., Henriques Vieira H., Kostanjšek F., Kabeláčová K., Chiriac M., Haber M., Shabarova T., Rychtecký P., Fernandes C., Znachor P., Szöke-Nagy T., Layoun P., Wong H., Kavagutti V., Bulzu P., Salcher M., Piwosz K., Ghai R. (2024) Global freshwater distribution of Telonemia protists. The ISME Journal
18: wrae177.
DOI: 10.1093/ismejo/wrae177
|
Henriques Vieira H., Bulzu P., Kasalický V., Haber M., Znachor P., Piwosz K., Ghai R. (2024) Isolation of a widespread giant virus implicated in cryptophyte bloom collapse. The ISME Journal
18: wrae029.
DOI: 10.1093/ismejo/wrae029
|
Layoun P., López-Pérez M., Haro-Moreno J.M., Haber M., Thrash J.C., Henson M.W., Kavagutti V., Ghai R., Salcher M. (2024) Flexible genomic island conservation across freshwater and marine Methylophilaceae. The ISME Journal
18: wrad036.
DOI: 10.1093/ismejo/wrad036
|
Park H., Bulzu P., Shabarova T., Kavagutti V., Ghai R., Kasalický V., Jezberová J. (2024) Uncovering the genomic basis of symbiotic interactions and niche adaptations in freshwater picocyanobacteria. Microbiome
12: 150.
DOI: 10.1186/s40168-024-01867-0
|
Villena-Alemany C., Mujakic I., Fecskeová L.K., Woodhouse J., Auladell A., Dean J., Hanusová M., Socha M., Gazulla C.R., Sunagawa S., Kavagutti V., Andrei A.S., Grossart H., Ghai R., Koblížek M., Piwosz K. (2024) Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. Microbiome
12: 65.
DOI: 10.1186/s40168-024-01786-0
|
Wong H., Bulzu P., Ghai R., Chiriac M., Salcher M. (2024) Ubiquitous genome streamlined Acidobacteriota in freshwater environments. ISME Communications
4: ycae124.
DOI: 10.1093/ismeco/ycae124
|
Kavagutti V., Bulzu P., Chiriac M., Salcher M., Mukherjee I., Shabarova T., Grujčić V., Mehrshad M., Kasalický V., Andrei A.S., Jezberová J., Seďa J., Rychtecký P., Znachor P., Šimek K., Ghai R. (2023) High‑resolution metagenomic reconstruction of the freshwater spring bloom. Microbiome
11: 15.
DOI: 10.1186/s40168-022-01451-4
|
Kavagutti V., Chiriac M., Ghai R., Salcher M., Haber M. (2023) Isolation of phages infecting the abundant freshwater Actinobacteriota order ‘Ca. Nanopelagicales’. The ISME Journal
17: 943–946.
DOI: 10.1038/s41396-023-01400-5
|
Ngugi D.K., Salcher M., Andrei A.S., Ghai R., Klotz F., Chiriac M., Ionescu D., Büsing P., Grossart H., Xing P., Priscu J.C., Alymkulov S., Pester M. (2023) Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes. Sciences Advances
9: eadc9392.
DOI: 10.1126/sciadv.adc9392
|
Šimek K., Mukherjee I., Szöke-Nagy T., Haber M., Salcher M., Ghai R. (2023) Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores. ISME Journal
17: 84–94.
DOI: 10.1038/s41396-022-01326-4
|
Bulzu P., Kavagutti V., Andrei A.S., Ghai R. (2022) The evolutionary kaleidoscope of rhodopsins. mSystems
7: e00405-22.
DOI: 10.1128/msystems.00405-22
|
Chiriac M., Bulzu P., Andrei A.S., Okazaki Y., Nakano S., Haber M., Kavagutti V., Layoun P., Ghai R., Salcher M. (2022) Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. Microbiome
10: 84.
DOI: 10.1186/s40168-022-01274-3
|
Bulzu P., Kavagutti V., Chiriac M., Vavourakis C.D. , Inoue K. , Kandori H. , Andrei A.S., Ghai R. (2021) Heliorhodopsin evolution is driven by photosensory promiscuity in monoderms. mSphere
6: e00661-21.
DOI: 10.1128/mSphere.00661-21
|
