HR Excellence in Science
Total found: 21 records
Wutkowska M., Nweze J., Tláskal V., Nweze J., Daebeler A. (2026) Uncovering hidden phylo- and ecogenomic diversity of the widespread methanotrophic genus Methylobacter FEMS Microbiology Ecology 102: article number fiaf127.
DOI: 10.1093/femsec/fiaf127
Hug L.A., Hatzenpichler R., Moraru C., Soares A.R., Meyer F., Heyder A., The data reuse Consortium, Daebeler A., Probst A.J. (2025) A roadmap for equitable reuse of public microbiome data Nature Microbiology 10: 2384–2395.
DOI: 10.1038/s41564-025-02116-2
Nweze J., Tláskal V., Wutkowska M., Meador Travis B., Pîcek T., Urbanová Z., Daebeler A. (2024) Regulators of aerobic and anaerobic methane oxidation in two pristine temperate peatland types FEMS Microbiology Ecology 100: Article number fiae153.
DOI: 10.1093/femsec/fiae153
Wutkowska M., Daebeler A. (2024) Draft genomes of three aerobic methanotrophs from a temperate eutrophic fishpond Microbiology Resource Announcements 13: 1-4.
DOI: 10.1128/mra.00152-24
Wutkowska M., Tláskal V., Bordel S., Stein L.Y., Nweze J., Daebeler A. (2024) Leveraging genome-scale metabolic models to understand aerobic methanotrophs The ISME Journal 18: wrae102.
DOI: 10.1093/ismejo/wrae102
Daebeler A., Güell-Bujons Q., Mooshammer M., Zechmeister T. , Herbold C.W., Richter A., Wagner M., Daims H. (2023) Rapid nitrification involving comammox and canonical Nitrospira at extreme pH in saline-alkaline lakes Environmental Microbiology 25: 1055–1067.
DOI: 10.1111/1462-2920.16337
Mueller A.J., Daebeler A., Herbold C.W., Kirkegaard R.H., Daims H. (2023) Cultivation and genomic characterization of novel and ubiquitous marine nitrite-oxidizing bacteria from the Nitrospirales The ISME Journal 17: 2123–2133.
DOI: 10.1038/s41396-023-01518-6
Ni G., Leung P.M., Daebeler A., Guo J., Hu S., Cook P., Nicol G.W., Daims H., Greening Ch. (2023) Nitrification in acidic and alkaline environments Essays in Biochemistry 67: 753–768.
DOI: 10.1042/EBC20220194
Daebeler A., Petrová E., Kinz E., Grausenburger S., Berthold H., Sandén T., Angel R. (2022) Pairing litter decomposition with microbial community structures using the Tea Bag Index (TBI) Soil 8: 163–176.
DOI: 10.5194/soil-8-163-2022
Leung P.M., Daebeler A., Chiri E., Hanchapola I., Gillett D.L., Schittenhelm R.B., Daims H., Greening Ch. (2022) A nitrite-oxidising bacterium constitutively consumes atmospheric hydrogen The ISME Journal 16: 2213–2219.
DOI: 10.1038/s41396-022-01265-0
Daebeler A., Kitzinger, K, Koch, H, Herbold C.W., Steinfeder, M, Schwarz, J, Zechmeister T. , Karst, SM, Albertsen, M, Nielsen, PH, Wagner M., Daims H. (2020) Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira The ISME Journal 14: 2967–2979.
Kitzinger, K, Koch, H, Lücker, S, Sedlacek, CJ, Herbold C.W., Schwarz, J, Daebeler A., Mueller, A, Lukumbuzya, M, Romano, S, Leisch, N, Karst, SM, Kirkegaard R.H., Albertsen, M, Nielsen, PH, Wagner M., Daims H. (2018) Characterization of the first “Candidatus Nitrotoga” isolate reveals metabolic versatility and separate evolution of widespread nitrite-oxidizing bacteria mBio 9: e01186-18.
Daebeler A., Bodelier, PLE, Hefting, MM, Rütting, T, Jia, Z, Laanbroek, HJ (2017) Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil Soil Biology and Biogeochemistry 107: 114–124.
Daebeler A., Herbold C.W., Vierheilig, J, Sedlacek, CJ, Pjevac, P, Albertsen, M, Kirkegaard R.H., de la Torre, J, Daims H., Wagner M. (2017) Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland frontiers in Microbiology 9: 193.
Kits, KD, Sedlacek, CJ, Lebedeva, EV, Han, P, Bulaev, A, Pjevac, P, Daebeler A., Romano, S, Albertsen, M, Stein, LY, Daims H., Wagner M. (2017) Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle Nature 549: 269–272.
Pjevac, P, Schauberger, C, Poghosyan, L, Herbold C.W., van Kessel, MAHJ, Daebeler A., Steinberger, M, Jetten, MSM, Lücker, S, Wagner M., Daims H. (2017) AmoA-targeted polymerase chain reaction primers for the specific detection and quantification of comammox Nitrospira in the environment frontiers in Microbiology 8: 1508.
Ho, A, Angel R., Veraart, AJ, Daebeler A., Jia, Z, Kim, SY, Kerckhof, F-M, Boon, N, Bodelier, PLE (2016) Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System frontiers in Microbiology 7: 1285.
Daebeler A., Bodelier, PLE, Hefting, MM, Laanbroek, HJ (2015) Ammonia-limited conditions cause of Thaumarchaeal dominance in volcanic grassland soil FEMS Microbiology Ecology 91: fiv014.
Daebeler A., Bodelier, PLE, Yan, Z, Hefting, MM, Jia, Z, Laanbroek, HJ (2014) Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil The ISME Journal 8: 2397–241.
Daebeler A., Gansen, M, Frenzel, P (2013) Methyl Fluoride Affects Methanogenesis Rather than Community Composition of Methanogenic Archaea in a Rice Field Soil Plos One 8: e53656.

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