Butenko A.,
Lukeš J., Speijer D., Weideman J.G. (2024) Mitochondrial genomes revisited: Why dodifferent lineages retain different genes? BMC Biology
22: 15.
DOI: 10.1186/s12915-024-01824-1
Documents to download:
Butenko_2024_BMCBiol (pdf)
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Kostygov A., Albanaz A.T.S., Butenko A., Gerasimov E.S.,
Lukeš J., Yurchenko V. (2024) Phylogenetic framework to explore trait evolution in Trypanosomatidae Trends in Parasitology
40: 2.
DOI: 10.1016/j.pt.2023.11.009
Documents to download:
Kostygov_2024_TrendsParasitol (pdf)
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Albanaz A.T.S., Carrington M., Frolov A., Ganyukova A., Gerasimov E.S.,
Lukeš J., Malysheva M.,
Votýpka J., Zakharova A.,
Záhonová K., Zimmer S., Yurchenko V., Butenko A. (2023) Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae BMC Genomics
24: 471.
DOI: 10.1186/s12864-023-09591-z
Documents to download:
Albanaz_2023 (pdf)
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Prokopchuk G., Butenko A.,
Dacks J., Speijer D.,
Field M.,
Lukeš J. (2023) Lessons from the deep: mechanisms behind diversification of eukaryotic protein complexes Biological Reviews
98: 1910–1927.
DOI: 10.1111/brv.12988
Documents to download:
Prokopchuk_2023_BiolRev (pdf)
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Valach M., Moreira S., Petitjean C.,
Benz C., Butenko A.,
Flegontova O.,
Nenarokova A.,
Prokopchuk G., Batstone T., Lapébie P., Lemogo L., Sarrasin M., Stretenowich P., Tripathi P., Yazaki E., Nara T., Henrissat B., Lang B.F., Gray M., Williams T.A.,
Lukeš J., Burger G. (2023) Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes. BMC Biology
21: 99.
DOI: 10.1186/s12915-023-01563-9
Documents to download:
Valach_2023_BMC (pdf)
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Zakharova A., Saura A., Morales J.,
Tashyreva D., Butenko A.,
Svobodová M., Poschmann G., Nandipati S., Zakharovová A., Noyvert D.,
Gahura O.,
Týč J., Stühler K., Kostygov A., Nowack E.C.M.,
Lukeš J., Yurchenko V. (2023) A neo-functionalized homolog of host transmembrane protein controls localization of bacterial endosymbionts in the trypanosomatid Novymonas esmeraldas Current Biology
33: 2690-2701.
DOI: 10.1016/j.cub.2023.04.060
Documents to download:
Zakharova_2023_CB (pdf)
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Lukeš J.,
Kachale A.,
Votýpka J., Butenko A.,
Field M. (2022) African trypanosome strategies for conquering new hosts and territories: the end of monophyly? Trends in Parasitology
38: 9.
DOI: 10.1016/j.pt.2022.05.011
Documents to download:
Lukes_2022_TrensParasitol (pdf)
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Tashyreva D., Simpson A.,
Prokopchuk G.,
Škodová-Sveráková I., Butenko A.,
Hammond M., George E.E.,
Flegontova O.,
Záhonová K.,
Faktorová D., Yabuki A.,
Horák A., Keeling P.,
Lukeš J. (2022) Diplonemids - A Review on "New" Flagellates on the Oceanic Block Protist
173: 125868.
DOI: 10.1016/j.protis.2022.125868
Documents to download:
Tashyreva_2022_Protist (pdf)
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Zakharova A., Albanaz A.T.S., Opperdoes F.R.,
Škodová-Sveráková I., Zagirova D., Saura A., Chmelová L., Gerasimov E.S., Leštinová T., Bečvář T., Sádlová J., Volf P.,
Lukeš J., Horváth A., Butenko A., Yurchenko V. (2022) Leishmania guyanensis M4147 as a new LRV1-bearing model parasite: Phosphatidate phosphatase 2-like protein controls cell cycle progression and intracellular lipid content PLoS Neglected Tropical Diseases
16: e0010510.
DOI: 10.1371/journal.pntd.0010510
Documents to download:
Zakharova_2022_PlosNeglTropDis (pdf)
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Albanaz A.T.S., Gerasimov E.S., Shaw J.J., Sádlová J.,
Lukeš J., Volf P., Opperdoes F.R., Kostygov A., Butenko A., Yurchenko V. (2021) Genome snalysis of endotrypanum and porcisia spp., closest phylogenetic relatives of Leishmania, highlights the role of amastins in shaping pathogenicity Genes
12: 444.
DOI: 10.3390/genes12030444
Documents to download:
Albanas_2021_Genes (pdf)
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Butenko A.,
Hammond M.,
Field M., Ginger M., Yurchenko V.,
Lukeš J. (2021) Reductionist Pathways for Parasitism in Euglenozoans? Expanded Datasets Provide New Insights Trends in Parasitology
37: 100–116.
DOI: 10.1016/j.pt.2020.10.001
Documents to download:
Butenko_2021_TrendsPar (pdf)
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Opperdoes F.R., Butenko A., Zakharova A., Gerasimov E.S., Zimmer S.,
Lukeš J., Yurchenko V. (2021) The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions Pathogens
10: E68.
DOI: 10.3390/pathogens10010068
Documents to download:
Opperdoes_2021_Pathogens (pdf)
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Poláková E.,
Záhonová K., Albanaz A.T.S., Butenko A.,
Lukeš J., Yurchenko V. (2021) Diverse telomeres in trypanosomatids Parasitology
148: 1254–1270.
DOI: 10.1017/S0031182021000378
Documents to download:
Polakova_2021_Parasitology (pdf)
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Skalický T., Alves J.M.P., Morais A.C., Režnarová J., Butenko A.,
Lukeš J., Buck G.A., Teixeira M.M.G., Camargo E.P., Sanders M., Cotton J.A., Yurchenko V., Kostygov A. (2021) Endosymbiont capture, a repeated process of endosymbiont transfer with replacement in trypanosomatids Angomonas spp. Pathogens
10: 702.
DOI: 10.3390/pathogens10060702
Documents to download:
Skalicky_2021_Pathogens (pdf)
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Škodová-Sveráková I.,
Záhonová K.,
Juricová V., Danchenko M.,
Moos M., Baráth P.,
Prokopchuk G., Butenko A., Lukáčová V., Kohútová L., Bučková B.,
Horák A.,
Faktorová D., Horváth A.,
Šimek P.,
Lukeš J. (2021) Highly flexible metabolism of the marine euglenozoan protist /Diplonema papillatum/. BMC Biology
19: 251.
DOI: 10.1186/s12915-021-01186-y
Documents to download:
Skodova-Sverakova_2021_BMCBiol (pdf)
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Yurchenko V., Butenko A., Kostygov A. (2021) Genomics of trypanosomatidae: where we stand and what needs to be done? Pathogens
10: 1124.
DOI: 10.3390/pathogens10091124
Documents to download:
Yurchenko_2021_Pathogens (pdf)
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Zakharova A., Saura A., Butenko A., Podešvová L., Warmusová S., Kostygov A.,
Nenarokova A.,
Lukeš J., Opperdoes F.R.,
Yurchenko V. (2021) A New Model Trypanosomatid, Novymonas esmeraldas: Genomic Perception of Its “Candidatus Pandoraea novymonadis” Endosymbiont mBio
12: e01606-21.
DOI: 10.1128/mBio.01606-21
Documents to download:
Zakharova_2021_mBio (pdf)
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Butenko A., Opperdoes F.R.,
Flegontova O.,
Horák A., Hampl V., Keeling P., Gawryluk R., Tikhonenkov D.V.,
Flegontov P.,
Lukeš J. (2020) Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids BMC biology
18: 23.
DOI: 10.1186/s12915-020-0754-1
Documents to download:
Butenko_BMC-Biology_2020 (pdf)
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D'avila-Levy C., Bearzatto B., Ambroise J., Helaers R. , Butenko A., Yurchenko V., Morelli K., Santos H., Brouillard P., Grellier P., Gala J.-L., Vikkula M. (2020) First draft genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford nanopore technology and illumina sequencing Tropical Medicine and Infectious Disease
5: 25.
DOI: 10.3390/tropicalmed5010025
Documents to download:
dAvila-Levy_2020_TropMedInfDis (pdf)
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Durante I., Butenko A.,
Rašková V., Charyyeva A.,
Svobodová M., Yurchenko V.,
Hashimi H.,
Lukeš J. (2020) Large-Scale Phylogenetic Analysis of Trypanosomatid Adenylate Cyclases Reveals Associations with Extracellular Lifestyle and Host-Pathogen Interplay Genome Biology and Evolution
12: 2403–2416.
DOI: 10.1093/gbe/evaa226
Documents to download:
Durante_2020_GenomeBiolEvol (pdf)
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